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  • NEXTFLEX™ Unique dual index barcodes (10NT, 1-16)

NEXTFLEX™ Unique dual index barcodes (10NT, 1-16)

NEXTFLEX NGS Library Prep
NEXTFLEX™ Unique dual index barcodes (10NT, 1-16)
NEXTFLEX NGS Library Prep
Revvity kit box for reagents and consumables
NEXTFLEX NGS Library Prep

Multiplex up to 1,536 samples on a single flow cell with NEXTFLEX™ Unique Dual Index Barcodes (10NT UDIs). Each kit ships with up to 1,536 pre-validated i5/i7 index pairs that eliminate index hopping and are compatible with Illumina platforms such as the NovaSeq® and Element’s AVITI™ systems. Off-the-shelf plate sets (containing between 16 to 1,536 unique adapters) let you start small and scale to population-level projects without requiring custom ordering or re-balancing.

View product information
Feature Specification
Automation Compatible Yes
Product Group Barcodes

Multiplex up to 1,536 samples on a single flow cell with NEXTFLEX™ Unique Dual Index Barcodes (10NT UDIs). Each kit ships with up to 1,536 pre-validated i5/i7 index pairs that eliminate index hopping and are compatible with Illumina platforms such as the NovaSeq® and Element’s AVITI™ systems. Off-the-shelf plate sets (containing between 16 to 1,536 unique adapters) let you start small and scale to population-level projects without requiring custom ordering or re-balancing.

View product information
Product variants
Barcodes: 1 - 16
フォーマット
1 rxn per well
Unit Size
16 rxns
Part #:
NOVA-634100-EVAL16
Barcodes: 1 - 24
フォーマット
1 rxn per well
Unit Size
24 rxns
Part #:
NOVA-634100-EVAL24
Barcodes: 1 - 48
フォーマット
1 rxn per well
Unit Size
48 rxns
Part #:
NOVA-634100-EVAL48
Barcodes: 1 - 96
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634101
Barcodes: 97 - 192
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634102
Barcodes: 193 - 288
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634103
Barcodes: 289 - 384
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634104
Barcodes: 385 - 480
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634105
Barcodes: 481 - 576
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634106
Barcodes: 577 - 672
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634107
Barcodes: 673 - 768
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634108
Barcodes: 769 - 864
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634109
Barcodes: 865 - 960
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634110
Barcodes: 961 - 1056
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634111
Barcodes: 1057 - 1152
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634112
Barcodes: 1153 - 1248
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634113
Barcodes: 1249 - 1344
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634114
Barcodes: 1345 - 1440
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634115
Barcodes: 1441 - 1536
フォーマット
1 rxn per well
Unit Size
96 rxns
Part #:
NOVA-634116
Barcodes: 1 - 1536
フォーマット
1 rxn per well
Unit Size
1,536 rxns
Part #:
NOVA-634100
Barcodes: 1 - 384
フォーマット
2 rxns per well
Unit Size
768 rxns
Part #:
NOVA-534101
Barcodes: 385 - 768
フォーマット
2 rxns per well
Unit Size
768 rxns
Part #:
NOVA-534102
Barcodes: 769 - 1152
フォーマット
2 rxns per well
Unit Size
768 rxns
Part #:
NOVA-534103
Barcodes: 1153 - 1536
フォーマット
2 rxns per well
Unit Size
768 rxns
Part #:
NOVA-534104
Barcodes: 1 - 1,536
フォーマット
2 rxns per well
Unit Size
3,072 rxns
Part #:
NOVA-534100
For research use only. Not for use in diagnostic procedures.
Request more information
NEXTFLEX NGS Library Prep
NEXTFLEX™ Unique dual index barcodes (10NT, 1-16)
NEXTFLEX NGS Library Prep
Revvity kit box for reagents and consumables
NEXTFLEX™ Unique dual index barcodes (10NT, 1-16)
NEXTFLEX NGS Library Prep
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Product information

  • Overview
  • Additional product information
  • Specifications
  • References

Overview

  • Up to 1,536 unique i5 / i7 pairs (10NT) ready to ship
  • Compatible with PCR-free and PCR-amplified workflows
  • ≥ 3-base Hamming distance across the entire set for robust error-correction and balanced base diversity on 2- & 4-color chemistries
  • Designed to minimize index hopping that can be present with patterned flow cells.
  • Compatible with Revvity library prep and TruSeq style, ligation-based workflows
  • Every lot is functionally validated and tested for index purity by sequencing in an ISO 9001 facility
  • Optional NEXTFLEX Universal Blockers boost on-target hybrid-capture efficiency when used with these UDIs.

Additional product information

NGS Multiplexing Performance

Scale from 2 to 1,536 libraries in a single NovaSeq® (Illumina) or AVITI® (Element)flow cell. The 10NT UDI set supports barcode rotation between runs, eliminating carry-over and virtually stopping index hopping on patterned flow cells. Adapters work out-of-the-box with all TruSeq-style library-prep kits, including NEXTFLEX, Illumina, Watchmaker, Twist library prep kit s, whether PCR-free or PCR-amplified.

“Revvity has a set of 1536 validated UDI adapters that we have been regularly using for 5 years. Using the Illumina® NovaSeq® X Plus with this UDI set from Revvity we can sequencing 12,288 samples across 8 lanes of the 10B or 25B flow cells.  This dramatically lowers our sequencing cost per sample!”

-Dr. Charlie Johnson, Director of Texas A&M Agri Life Genomics and Bioinformatics Service

NGS Adapters with High Data Integrity

Each NEXTFLEX UDI adapter has a dedicated 10NT i7 & i5 sequence separated from every other pair by a ≥ 3-base Hamming distance, enabling single-base error correction during demultiplexing. Because the adapter already contains the full flow-cell and primer-binding sites, PCR enrichment is optional. On patterned flow cells (Illumina NovaSeq®, HiSeq® 3000/4000, HiSeq® X, Element AVITI™) the use of true, unique dual indexes cuts index-hopping artefacts to background levels by removing mis-assigned reads. Every lot is sequenced for ≥ 99.9 % index purity and functional ligation efficiency, ensuring data integrity run after run.

nextflex udi barcodes infographic wide
 

Specifications

Automation Compatible
Yes
Barcodes
1 - 16
Format
1 rxn per well
Product Group
Barcodes
Shipping Conditions
Shipped in Dry Ice
Unit Size
16 rxns

References

Selected Citations that Reference the Use of the NEXTFLEX UDI Barcodes:

  • Adolfi, A., Gantz, V.M., Jasinskiene, N. et al. Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi. Nat Commun 11, 5553 (2020).
  • Estermann, M. (2020). Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites. doi:10.1242/prelights.18906.
  • Gardner, E. J., Prigmore, E., Gallone, G., Danecek, P., Samocha, K. E., Handsaker, J., . . . Hurles, M. E. (2019). Contribution of retrotransposition to developmental disorders. Nature Communications, 10(1). doi:10.1038/s41467-019-12520-y.
  • Gaeta, N. C., Bean, E., Miles, A. M., Daniel Ubriaco Oliveira Gonçalves De Carvalho, Alemán, M. A., Carvalho, J. S., . . . Ganda, E. (2020). A Cross-Sectional Study of Dairy Cattle Metagenomes Reveals Increased Antimicrobial Resistance in Animals Farmed in a Heavy Metal Contaminated Environment. Frontiers in Microbiology, 11. doi:10.3389/fmicb.2020.590325.
  • Hirose, K., Chang, S., Yu, H., Wang, J., Barca, E., Chen, X., . . . Huang, G. N. (2019). Loss of a novel striated muscle-enriched mitochondrial protein Coq10a enhances postnatal cardiac hypertrophic growth. doi:10.1101/755793.
  • Leon, K. E., et al. (2020) DOT1L modulates the senescence-associated secretory phenotype through epigenetic regulation of IL1A. bioRxiv 2020.08.21.258020; doi: 10.1101/2020.08.21.258020
  • Miura, H., Takahashi, S., Shibata, T. et al. Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing. Nat Protoc 15, 4058–4100 (2020). doi.org/10.1038/s41596-020-0378-5
  • Starr, T. N., Greaney, A. J., Hilton, S. K., Crawford, K. H., Navarro, M. J., Bowen, J. E., Bloom, J. D. (2020). Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding. doi:10.1101/2020.06.17.157982.
  • Veenvliet, J. V., et al. (2020) Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites. bioRxiv 2020.03.04.974949; doi.org/10.1101/2020.03.04.974949.
  • Dubey SK et al. (2025). Deciphering age-related transcriptomic changes in the mouse retinal pigment epithelium. Aging (Albany NY) 17(3):657–684. DOI: 10.18632/aging.206219
  • Pujari & Cullen (2024) Modulators of MAPK pathway activity during filamentous growth in Saccharomyces cerevisiae. G3 14(6):jkae072
  • Kant et al. (2023) High-quality full genome assembly of historic Xylella fastidiosa strains… Microbiol Resour Announc. 12(11):e00536-23.
  • Arras et al. (2023) Characterisation of an E. coli line that completely lacks ribonucleotide reduction… eLife 12:e83845.
  • Larkin et al. (2025) Climate-driven succession in marine microbiome biodiversity and biogeochemical function. Nat Commun. 16:3926.
  • Klauer et al. (2024) Hydrophobins from Aspergillus mediate fungal interactions with microplastics. bioRxiv preprint 2024.11.05.622132.

FAQs

  • Are the UDI barcodes sequence-verified and functionally validated?

    Yes. Every lot of NEXTFLEX UDI barcodes is sequenced on an Illumina MiSeq® to confirm ≥ 99.9 % index purity and is function-tested in a library prep to verify ligation efficiency.

  • What is the lead time when I order the NEXTFLEX unique dual index barcodes?

    They are in-stock and ready-to-ship.

  • Must I perform paired-end sequencing with NEXTFLEX Unique Dual Index Barcodes?

    No, they are compatible with paired-end and single-read sequencing runs. The I7 and I5 indexes are read in separate sequencing events than Read 1 and Read 2.

  • Can I use the NEXTFLEX Unique Dual Index Barcodes in single index experiments?

    Yes, you can configure your sequencing run to only read the I7 index when you set up the run.

  • What are the storage and shipping conditions?

    Shipped on dry ice; store at –20 °C. Stable through five freeze-thaw cycles.

  • Do the UDIs work with PCR-free workflows?

    Yes, Full-length adapters contain the complete flow-cell/primer sites, so PCR is optional.

  • Can I combine just a subset of the indexes in one run?

    Yes. Any subset maintains ≥ 3-base Hamming distance; simply update your sample sheet with the indexes you use.

  • How do unique dual indexes mitigate index hopping?

    Every library carries a unique i7 + unique i5 barcode. If an index hops, it forms an impossible i5/i7 combo that demultiplexing software discards, cutting cross-talk to < 0.1%

  • Are these adapters compatible with NEXTFLEX Universal Blockers? 

    Yes. NEXTFLEX Universal Blockers were designed to work with all Truseq and Nextera style adapters.

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NEXTFLEX UDI Barcodes Sequences 1536 Set

This excel file includes the sequences of the indexes for the 1536 NEXTFLEX UDI Barcodes.

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